Specimen Example: specimen-example-isolate

Narrative

[Put rendering here]

Example XML

<?xml version="1.0" encoding="UTF-8"?>
<Specimen xmlns:xhtml="http://www.w3.org/1999/xhtml" xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
    <id value="isolate"/>
        <!--text>
    <status value="generated" />
    <div xmlns="http://www.w3.org/1999/xhtml">[Put rendering here]</div>
  </text>-->

    <contained>
        <Specimen>
            <id value="stool"/>
            <identifier>
                <type>
                    <coding>
                        <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                        <code value="ACSN"/>
                        <display value="Accession ID"/>
                    </coding>
                </type>
                <system value="http://lab.acme.org/specimens/2015"/>
                <value value="X352356"/>
            </identifier>
            <identifier>
                <type>
                    <coding>
                        <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                        <code value="ACSN"/>
                        <display value="Accession ID"/>
                    </coding>
                </type>
                <system value="http://lab.acme.org/specimens/2015"/>
                <value value="X352356"/>
            </identifier>
            <status value="unavailable"/>
            <type>
                <!--
   Type is a loosely defined field because there is such a lot of variation in how it is used.
   The principal variation is how much information that could be represented elsewhere is also
   represented here. For instance, here's some possible types:
     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)
     transfusion bag of blood (+ container.type)
     Peritoneal lavage        (+ collection.bodySite)
   If the type includes other fields, it would be normal not to populate the other fields

   Note that this practice is so widespread that it's pointless to try and stop it 
-->
                <coding>
                    <system value="http://snomed.info/sct"/>
                    <code value="119339001"/>
                    <display value="Stool specimen"/>
                </coding>
            </type>
            <subject>
                <reference value="Patient/example"/>
            </subject>
            <receivedTime value="2015-08-16T07:03:00Z"/>
            <collection>
                <collector>
                    <!--   in practice, collecter is almost always recorded   -->
                    <display value="Patient"/>
                </collector>
                <!--   the time of collection is usually required. Usually a point in time, but can be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)   -->
                <collectedDateTime value="2011-08-16T06:15:00Z"/>
                <!--   method is usually implied by type   -->
                <method>
                    <coding>
                        <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/>
                        <code value="LNV"/>
                    </coding>
                </method>
            </collection>
        </Specimen>
    </contained>
    <identifier>
        <type>
            <coding>
                <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                <code value="ACSN"/>
                <display value="Accession ID"/>
            </coding>
        </type>
        <system value="http://lab.acme.org/specimens/2011"/>
        <value value="X352356-ISO1"/>
    </identifier>
    <identifier>
        <type>
            <coding>
                <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                <code value="ACSN"/>
                <display value="Accession ID"/>
            </coding>
        </type>
        <system value="http://lab.acme.org/specimens/2011"/>
        <value value="X352356-ISO1"/>
    </identifier>
    <status value="available"/>
    <type>
        <coding>
            <system value="http://snomed.info/sct"/>
            <code value="119303007"/>
            <display value="Microbial isolate specimen"/>
        </coding>
        <text value="Bacterial isolate specimen"/>
    </type>
    <subject>
        <reference value="Patient/example"/>
    </subject>
    <receivedTime value="2015-08-18T07:03:00Z"/>
    <parent>
        <reference value="#stool"/>
    </parent>
    <role>
        <coding>
            <code value="p"/>
            <display value="Patient"/>
        </coding>
    </role>
    <collection>
        <collector>
            <!--   in practice, collecter is almost always recorded   -->
            <reference value="Practitioner/f202"/>
        </collector>
        <!--   the time of collection is usually required. Usually a point in time, but can be a period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)   -->
        <collectedDateTime value="2015-08-16T07:03:00Z"/>
        <!--   method is usually implied by type   -->
        <method>
            <coding>
                <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/>
                <code value="BAP"/>
            </coding>
        </method>
    </collection>
    <note>
        <text value="Patient dropped off specimen"/>
    </note>
</Specimen>