MolecularDefinition Example: moleculardefinition-example-sequence1

Example XML

<?xml version="1.0" encoding="UTF-8"?>
<MolecularDefinition xmlns="http://hl7.org/fhir">
    <id value="example-sequence1"/>
    <moleculeType>
        <coding>
            <system value="http://hl7.org/fhir/sequence-type"/>
            <code value="dna"/>
            <display value="DNA Sequence"/>
        </coding>
    </moleculeType>
    <representation>
        <literal>
            <value value="ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC
TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA
GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG
AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG
CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT
GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG
ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA
AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG
TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC
AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA
GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"/>
        </literal>
        <resolvable>
            <reference value="DocumentReference/example-genomicFile-mw7162561"/>
        </resolvable>
        <extracted>
            <startingMolecule>
                <reference value="MolecularDefinition/example-starting-sequence-2b-extracted"/>
                <type value="MolecularDefinition"/>
                <display value="Starting Sequence Resource:
                ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC
                TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA
                GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG
                AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG
                CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT
                GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG
                ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA
                AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG
                TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC
                AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA
                GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGAGCCTGTACAGACAGTT
                AATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"/>
            </startingMolecule>
            <coordinateInterval>
                <coordinateSystem>
                    <system>
                        <coding>
                            <system value="http://loinc.org"/>
                            <code value="LA30100-4"/>
                            <display value="0-based interval counting"/>
                        </coding>
                        <text value="0-based interval counting"/>
                    </system>
                </coordinateSystem>
                <start value="0"/>
                <end value="754"/>
            </coordinateInterval>

            <reverseComplement value="false"/>
        </extracted>
        <concatenated>
            <sequenceElement>
                <sequence>
                    <reference value="MolecularDefinition/example-sequence0-2b-concatenated"/>
                    <type value="MolecularDefinition"/>
                    <display value="Sequence-of index 0-Resource for concatenated sequence example:
                    ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC
TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA
GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG"/>
                </sequence>
                <ordinalIndex value="0"/>
            </sequenceElement>
            <sequenceElement>
                <sequence>
                    <reference value="MolecularDefinition/example-sequence1-2b-concatenated"/>
                    <type value="MolecularDefinition"/>
                    <display value="Sequence-of index 1-Resource for concatenated sequence example:
                    AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG
CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT
GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG
ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA
AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG"/>
                </sequence>
                <ordinalIndex value="1"/>
            </sequenceElement>
            <sequenceElement>
                <sequence>
                    <reference value="MolecularDefinition/example-sequence2-2b-concatenated"/>
                    <type value="MolecularDefinition"/>
                    <display value="Sequence-of index 2-Resource for concatenated sequence example:
                    TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC
AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA
GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"/>
                </sequence>
                <ordinalIndex value="2"/>
            </sequenceElement>
        </concatenated>
        <relative>
            <startingMolecule>
                <reference value="MolecularDefinition/example-starting-sequence-2b-relative"/>
                <type value="MolecularDefinition"/>
                <display value="Starting Sequence Resource"/>
            </startingMolecule>
            <edit>
                <coordinateInterval>
                    <coordinateSystem>
                        <system>
                            <coding>
                                <system value="http://loinc.org"/>
                                <code value="LA30100-4"/>
                                <display value="0-based interval counting"/>
                            </coding>
                            <text value="0-based interval counting"/>
                        </system>
                    </coordinateSystem>
                    <start value="0"/>
                    <end value="5"/>
                </coordinateInterval>

                <replacementMolecule>
                    <reference value="MolecularDefinition/example-replacement-sequence"/>
                    <type value="MolecularDefinition"/>
                    <display value="Replacement Sequence Resource: ATGAA"/>
                </replacementMolecule>
                <replacedMolecule>
                    <reference value="MolecularDefinition/example-replaced-sequence"/>
                    <type value="MolecularDefinition"/>
                    <display value="Replaced Sequence Resource: CCCCC"/>
                </replacedMolecule>
            </edit>
        </relative>
    </representation>
</MolecularDefinition>