View raw Markdown
type: exampleresource: MolecularDefinitionexample: moleculardefinition-example-haplotype1

MolecularDefinition Example: moleculardefinition-example-haplotype1

Example XML

<?xml version="1.0" encoding="UTF-8"?>
<MolecularDefinition xmlns="http://hl7.org/fhir">
    <id value="example-haplotype1"/>
    <moleculeType>
        <coding>
            <system value="http://hl7.org/fhir/sequence-type"/>
            <code value="dna"/>
            <display value="DNA Sequence"/>
        </coding>
    </moleculeType>
    <name value="CYP2C19*1B"/>
    <name value="CYP2C19*1.002"/>
    <memberState>
        <reference value="MolecularDefinition/example-allele1"/>
        <type value="MolecularDefinition"/>
        <display value="First Allele, NG_008384.3:g.5124C>T"/>
    </memberState>
    <memberState>
        <reference value="MolecularDefinition/example-allele2"/>
        <type value="MolecularDefinition"/>
        <display value="Second Allele, NG_008384.3:g.85186A>G"/>
    </memberState>
    <location>
        <sequenceLocation>
            <sequenceContext>
                <reference value="MolecularDefinition/example-sequence-lrg584"/>
                <type value="MolecularDefinition"/>
                <display value="Starting Sequence Resource: LRG_584"/>
            </sequenceContext>
            <coordinateInterval>
                <coordinateSystem>
                    <system>
                        <coding>
                            <system value="http://loinc.org"/>
                            <code value="LA30100-4"/>
                            <display value="0-based interval counting"/>
                        </coding>
                        <text value="0-based interval counting"/>
                    </system>
                </coordinateSystem>
                <startQuantity>
                    <value value="5001"/>
                </startQuantity>
                <endQuantity>
                    <value value="97867"/>
                </endQuantity>
            </coordinateInterval>
        </sequenceLocation>
    </location>
</MolecularDefinition>